4ILG

Crystal structure of Aar2p in complex with the Prp8p RNaseH and Jab1/MPN domains

Structural Biology Knowledgebase: 4ILG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.180

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4ILG

Classification: SPLICING

Total Structure Weight: 100450.40

Macromolecule Entities
Molecule Chains Length Organism Details
A1 cistron-splicing factor AAR2 A 342 Saccharomyces cerevisiae Mutation: L153S, K154S, ΔL157, ΔQ158, ΔK159, ΔA160, ΔG161, ΔK163, ΔM164, ΔE165, ΔA166, ΔK167, ΔN168, ΔE169, ΔD170
Gene Name(s): AAR2 Gene View YBL074C YBL06.06 YBL0611
Pre-mRNA-splicing factor 8 B 258 Saccharomyces cerevisiae Fragment: yPrp8 RNaseH (UNP Residues 1835-2090)
Gene Name(s): PRP8 DBF3 DNA39 RNA8 SLT21 USA2 YHR165C
Pre-mRNA-splicing factor 8 C 270 Saccharomyces cerevisiae Fragment: yPrp8 Jab1/MPN (UNP Residues 2147-2413)
Gene Name(s): PRP8 DBF3 DNA39 RNA8 SLT21 USA2 YHR165C

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

C 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.180
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.77 α = 90.00
b = 63.74 β = 95.39
c = 110.52 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-31
  • Released Date: 2013-03-13
  • Deposition author(s): Weber, G., Heroven, A.C., Santos, K.F., Wahl, M.C.

Revision History

  • 2013-06-19
    Type: Entry title | Details: Fix spelling mistake in title
  • 2013-03-27
    Type: Citation | Details: Citation update