4HUC

Crystal structure of LdtMt2, a L,D-transpeptidase from Mycobacterium tuberculosis: domain B and C

Structural Biology Knowledgebase: 4HUC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.165

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HUC

Classification: UNKNOWN FUNCTION

Total Structure Weight: 57772.12

Macromolecule Entities
Molecule Chains Length Organism Details
PROBABLE CONSERVED LIPOPROTEIN LPPS A, B 262 Mycobacterium tuberculosis EC#: 2.3.2 IUBMB
Fragment: UNP residues 149-408
Gene Name(s): ldtB MT2594 V735_02606

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ACT
Query on ACT

A, B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.188
  • R-Value Work: 0.165
  • Space Group: I 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 116.03 α = 90.00
b = 121.43 β = 90.00
c = 123.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-02
  • Released Date: 2012-12-12
  • Deposition author(s): Both, D., Steiner, E., Lindqvist, Y., Schnell, R., Schneider, G.

Revision History

  • 2013-05-15
    Type: Citation | Details: Citation update
  • 2012-12-12
    Type: Citation | Details: Citation update