4HPO

Crystal structure of RV144-elicited antibody CH58 in complex with V2 peptide

Structural Biology Knowledgebase: 4HPO SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 4HPO

Classification: Immune System / Viral Protein

Total Structure Weight: 50906.96

Macromolecule Entities
Molecule Chains Length Organism Details
CH58 Fab heavy chain H 231 Homo sapiens
CH58 Fab light chain L 216 Homo sapiens
Envelope glycoprotein gp160 P 19 Human immunodeficiency virus 1 Fragment: UNP residues 160-178
Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

L N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

L ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.185
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 140.59 α = 90.00
b = 75.80 β = 111.99
c = 54.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-24
  • Released Date: 2013-02-06
  • Deposition author(s): McLellan, J.S., Gorman, J., Haynes, B.F., Kwong, P.D.

Revision History

No revisions since initial release