4HPI

Crystal Structure of Hen Egg White Lysozyme complex with GN2-M

Structural Biology Knowledgebase: 4HPI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.19 Å
  • R-Value Free: 0.180
  • R-Value Work: 0.168

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HPI

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 14918.82

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme C A 129 Gallus gallus EC#: 3.2.1.17 IUBMB
Gene Name(s): LYZ Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NOJ
Query on NOJ

A 1-DEOXYNOJIRIMYCIN
MORANOLINE (Synonym)
C6 H13 N O4
LXBIFEVIBLOUGU-JGWLITMVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.19 Å
  • R-Value Free: 0.180
  • R-Value Work: 0.168
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.42 α = 90.00
b = 77.42 β = 90.00
c = 38.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-23
  • Released Date: 2013-01-16
  • Deposition author(s): Umemoto, N., Numata, T., Ohnuma, T., Fukamizo, T.

Revision History

  • 2014-02-12
    Type: Citation | Details: Citation update
  • 2013-03-13
    Type: Other | Details: Remove PRD info on PRD molecule with WAIT status