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Crystal Structure of Full-Length Human IFIT5 with 5`-triphosphate Oligouridine
DOI:10.2210/pdb4hos/pdb   NDB ID: NA2096
4HOS
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: RNA Binding Protein/rna
    Structure Weight: 57296.97
    Molecule: Interferon-induced protein with tetratricopeptide repeats 5
    Polymer: 1 Type: protein Length: 482
    Chains: A
    Organism: Homo sapiens
    Gene Names: Gene View for IFIT5 ISG58 RI58
    UniProtKB: Protein Feature View | Search PDB | Q13325  
    Molecule: RNA (5'-R(*(UTP)P*UP*UP*U)-3')
    Polymer: 2 Type: rna Length: 4
    Chains: X
    Details: 5`-triphosphate oligouridine
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4HOQ   
    4HOR   
    4HOT   
    4HOU   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NA
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    NA Na
    SODIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    UTP
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    UTP C9 H15 N2 O15 P3 nonPolymer
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2096
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Abbas, Y.M.,  Pichlmair, A.,  Gorna, M.W.,  Superti-Furga, G.,  Nagar, B.

    Deposition:   2012-10-22
    Release:   2013-01-23
    Last Modified (REVDAT):   2013-02-27
     
  •   Revision History    Hide
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    2013-02-27
    Citation
    2013-02-06
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.00
    R-Value: 0.177 (obs.)
    R-Free: 0.207
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 54.47 α = 90.00 
    b = 84.94 β = 106.75 
    c = 60.93 γ = 90.00