4HIB

Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N4-OH

Structural Biology Knowledgebase: 4HIB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HIB

Classification: LYASE / LYASE INHIBITOR

Total Structure Weight: 68950.19

Macromolecule Entities
Molecule Chains Length Organism Details
Uridine 5'-monophosphate synthase A, B 312 Homo sapiens EC#: 4.1.1.23 IUBMB
Fragment: UNP residues 190-480
Gene Name(s): UMPS Gene View OK/SW-cl.21

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
16B
Query on 16B

A, B N-hydroxycytidine 5'-(dihydrogen phosphate)
C9 H14 N3 O9 P
DYOUVDKCXLKHKY-XVFCMESISA-N
Ligand Explorer
 
JSmol
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
GOL
Query on GOL

A GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.223
  • R-Value Work: 0.190
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.78 α = 90.00
b = 61.64 β = 112.08
c = 71.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-11
  • Released Date: 2012-11-14
  • Deposition author(s): To, T.K., Kotra, L.P., Pai, E.F.

Revision History

  • 2012-12-19
    Type: Citation | Details: Citation update