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Crystal structure of CRM1(T539S)-Ran-RanBP1 with weakly bound unmodeled Leptomycin B
4HB3
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Protein Transport/antibiotic
    Structure Weight: 158801.16
    Molecule: GTP-binding nuclear protein Ran
    Polymer: 1 Type: protein Length: 216
    Chains: A
    Organism Homo sapiens
    Gene Names RAN ARA24 OK/SW-cl.81
    UniProtKB:   Protein Feature View | Search PDB | P62826  
    Molecule: Ran-specific GTPase-activating protein 1
    Polymer: 2 Type: protein Length: 140
    Chains: B
    Fragment: RanDB1 (UNP residues 62-201)
    Organism Saccharomyces cerevisiae
    Gene Names YRB1 CST20 HTN1 SFO1 YDR002W YD8119.08
    UniProtKB:   Protein Feature View | Search PDB | P41920  
    Molecule: Exportin-1
    Polymer: 3 Type: protein Length: 1023
    Chains: C
    Fragment: SEE REMARK 999
    Mutation: T539S,Y1022C
    Organism Saccharomyces cerevisiae
    Gene Names CRM1 KAP124 XPO1 YGR218W G8514
    UniProtKB:   Protein Feature View | Search PDB | P30822  
     
  •   Structure Validation Hide

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  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Saccharomyces cerevisiae   Taxonomy   Common Name: Yeast Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    4GMX   
    4GPT   
    4HAT   
    4HAU   
    4HAV   
    4HAW   
    4HAX   
    4HAY   
    4HAZ   
    4HB0   
    4HB2   
    4HB4   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CL
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    CL Cl
    CHLORIDE ION
    GNP
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    GNP C10 H17 N6 O13 P3
    PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Sun, Q.,  Chook, Y.M.

    Deposition:   2012-09-27
    Release:   2013-01-09
    Last Modified (REVDAT):   2013-05-08
     
  •   Revision History    Hide
    Mouse over text for details
    2013-05-08
    Entry title
    2013-02-06
    Citation
    2013-01-23
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.80
    R-Value: 0.243 (obs.)
    R-Free: 0.276
    Space Group: P 43 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 106.12 α = 90.00 
    b = 106.12 β = 90.00 
    c = 305.42 γ = 90.00