4HA3

Structure of beta-glycosidase from Acidilobus saccharovorans in complex with Tris

Structural Biology Knowledgebase: 4HA3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.159
  • R-Value Work: 0.143

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HA3

Classification: HYDROLASE

Total Structure Weight: 56077.77

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-galactosidase A 489 Acidilobus saccharovorans EC#: 3.2.1.23 IUBMB
Gene Name(s): ASAC_1390

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TRS
Query on TRS

A 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Free: 0.159
  • R-Value Work: 0.143
  • Space Group: P 42 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.18 α = 90.00
b = 84.18 β = 90.00
c = 166.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-25
  • Released Date: 2012-10-10
  • Deposition author(s): Trofimov, A.A., Polyakov, K.M., Tikhonov, A.V., Bezsudnova, E.Y., Dorovatovskii, P.V., Gumerov, V.M., Ravin, N.V., Skryabin, K.G., Popov, V.O.

Revision History

  • 2013-09-04
    Type: Citation | Details: Citation update