4H4O

Crystal Structure of HIV-1 Reverse Transcriptase (RT) in Complex with (E)-3-(3-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)- 4-fluorophenoxy)-5-fluorophenyl)acrylonitrile (JLJ506), A Non-nucleoside inhibitor

Structural Biology Knowledgebase: 4H4O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.232

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4H4O

Classification: Hydrolase / Hydrolase inhibitor

Total Structure Weight: 114441.47

Macromolecule Entities
Molecule Chains Length Organism Details
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p66 RT A 557 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.13.2 IUBMB 3.1.26.13 IUBMB
Fragment: HIV-1 Reverse Transcriptase, p66 Subunit
Mutation: K172A, K173A, C280S
Gene Name(s): gag-pol
Reverse transcriptase/ribonuclease H, Exoribonuclease H, p51 RT B 428 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB 2.7.7.7 IUBMB 3.1.13.2 IUBMB 3.1.26.13 IUBMB
Fragment: HIV-1 Reverse Transcriptase, p51 Subunit
Mutation: C280S
Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
506
Query on 506

A (2E)-3-(3-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin- 1(2H)-yl)ethoxy]-4-fluorophenoxy}-5-fluorophenyl)prop- 2-enenitrile
C21 H15 F2 N3 O4
USRHSVZSPKDGMT-OWOJBTEDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.232
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 225.45 α = 90.00
b = 69.57 β = 106.21
c = 104.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-17
  • Released Date: 2012-12-05
  • Deposition author(s): Frey, K.M., Anderson, K.S.

Revision History

  • 2013-01-02
    Type: Citation | Details: Citation update