Download MendeleyTwo-domain laccase from streptomyces lividans at 2.4 A resolution AC1709
Gabdulkhakov, A., Tischenko, S., Yurevich, L., Lisov, A., Leontievsky, A.To be published.
4GYB
Two-domain laccase from streptomyces lividans at 2.4 A resolution AC1709
- PDB DOI: https://doi.org/10.2210/pdb4GYB/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Streptomyces lividans TK24
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2012-09-05 Released: 2013-10-02
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.177
- R-Value Work: 0.154
- R-Value Observed: 0.155
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Copper oxidase | 343 | Streptomyces lividans TK24 | Mutation(s): 0 Gene Names: SSPG_00990 |  | |
UniProt | |||||
Find proteins for D6EFA0 (Streptomyces lividans TK24) Explore D6EFA0 Go to UniProtKB: D6EFA0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | D6EFA0 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 5 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PG4 Query on PG4 | H [auth A], K [auth A] | TETRAETHYLENE GLYCOL C8 H18 O5 UWHCKJMYHZGTIT-UHFFFAOYSA-N |  | ||
| PGE Query on PGE | I [auth A], J [auth A] | TRIETHYLENE GLYCOL C6 H14 O4 ZIBGPFATKBEMQZ-UHFFFAOYSA-N |  | ||
| CU Query on CU | B [auth A], C [auth A], D [auth A], E [auth A] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
| CL Query on CL | G [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | F [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.177
- R-Value Work: 0.154
- R-Value Observed: 0.155
- Space Group: P 43 3 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 177.54 | α = 90 |
| b = 177.54 | β = 90 |
| c = 177.54 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XDS | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2013-10-02 Deposition Author(s): Gabdulkhakov, A., Tischenko, S., Yurevich, L., Lisov, A., Leontievsky, A.
Revision History (Full details and data files)
- Version 1.0: 2013-10-02
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
