R283K DNA polymerase beta ternary complex with a templating 8OG and incoming dATP analog DOI:10.2210/pdb4gxk/pdb   NDB ID: NA2019

4GXK   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase/dna Structure Weight: 48519.19 Molecule: DNA polymerase beta Polymer: 1 Type: protein Length: 335 Chains: A EC#: 2.7.7.7    4.2.99    Organism Homo sapiens Gene Name POLB UniProtKB:   Protein Feature View | Search PDB | P06746     Molecule: DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3') Polymer: 2 Type: dna Length: 16 Chains: T Organism synthetic construct Molecule: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3') Polymer: 3 Type: dna Length: 10 Chains: P Organism synthetic construct Molecule: DNA (5'-D(P*GP*TP*CP*GP*G)-3') Polymer: 4 Type: dna Length: 5 Chains: D Organism synthetic construct     Source Hide Polymer: 1 Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli   Polymer: 2 Scientific Name: Synthetic construct (synthetic construct)   Taxonomy     Polymer: 3 Scientific Name: Synthetic construct (synthetic construct)   Taxonomy     Polymer: 4 Scientific Name: Synthetic construct (synthetic construct)   Taxonomy         Related PDB Entries Hide Identifier Details 4GXI    4GXJ        Ligand Chemical Component Hide Identifier Formula Name Interactions F2A Search  Download  C11 H18 N5 O11 P3 2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine   Ligand Explorer MN Search  Download  Mn MANGANESE (II) ION   Ligand Explorer NA Search  Download  Na SODIUM ION   Ligand Explorer     External Ligand Annotations Hide Identifier   Binding Affinity (Sequence Identity %) F2A Search  Download  Ki: 5000 nM (99) - data from BindingDB   N/A in BindingMoad N/A in PDBbind     Modified Residues Hide Identifier Formula Parent Type 8OG Search  C10 H14 N5 O8 P DG dnaLinking     External Domain Annotations Hide Pfam Classification: 1 Domain - data from Pfam   GO Terms: 26 Terms - data from GO      Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA2019     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Freudenthal, B.D.,  Beard, W.A.,  Wilson, S.H. Deposition:   2012-09-04 Release:   2013-01-16 Last Modified (REVDAT):   2013-02-27     Revision History    Hide Mouse over text for details 2013-02-27 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.00 R-Value: 0.222 (obs.) R-Free: 0.278 Space Group: P 21 Unit Cell:   Length [Å] Angles [°] a = 54.86 α = 90.00  b = 78.79 β = 112.65  c = 55.15 γ = 90.00      Molecule of the Month Hide DNA Polymerase