4GDF

A Crystal Structure of SV40 Large T Antigen

Structural Biology Knowledgebase: 4GDF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.227

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GDF

Classification: HYDROLASE / DNA

Total Structure Weight: 269435.47


Macromolecule Entities
Molecule Chains Length Organism Details
Large T antigen A, B, E, F 497 Simian virus 40 EC#: 3.6.4 IUBMB
Fragment: UNP residues 131-627
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (32-MER) C, G 32 synthetic
DNA (32-MER) D, H 32 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, E, F ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.255
  • R-Value Work: 0.227
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 73.63 α = 90.00
b = 128.31 β = 89.91
c = 166.12 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-31
  • Released Date: 2013-04-10
  • Deposition author(s): Chang, Y.P., Xu, M., Chen, X.S.

Revision History

  • 2013-05-15
    Type: Citation | Details: Citation update