A Crystal Structure of SV40 Large T Antigen
DOI:10.2210/pdb4gdf/pdb   NDB ID: NA1973
Primary Citation
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 269435.57
    Molecule: Large T antigen
    Polymer: 1 Type: protein Length: 497
    Chains: A, B, E, F
    EC#: 3.6.4   
    Fragment: UNP residues 131-627
    Organism: Simian virus 40
    UniProtKB: Protein Feature View | Search PDB | P03070  
    Molecule: DNA (32-MER)
    Polymer: 2 Type: dna Length: 32
    Chains: C, G
    Molecule: DNA (32-MER)
    Polymer: 3 Type: dna Length: 32
    Chains: D, H
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Simian virus 40   Taxonomy   Common Name: Sv40 Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN Zn
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1973
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Chang, Y.P.,  Xu, M.,  Chen, X.S.

    Deposition:   2012-07-31
    Release:   2013-04-10
    Last Modified (REVDAT):   2013-05-15
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.80
    R-Value: 0.227 (work)
    R-Free: 0.255
    Space Group: P 1 21 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 73.63 α = 90.00 
    b = 128.31 β = 89.91 
    c = 166.12 γ = 90.00