4FSE

crystal structure of beta-site app-cleaving enzyme 1 (bace-wt) complex with N-(N-(4-amino-3,5- dichlorobenzyl)carbamimidoyl)-3-(4-methoxyphenyl)-5- methyl-4-isothiazolecarboxamide

Structural Biology Knowledgebase: 4FSE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.217

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FSE

Classification: HYDROLASE / INHIBITOR

Total Structure Weight: 203883.62

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-secretase 1 A, B, D, E 455 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Fragment: UNP residues 14-454
Gene Name(s): BACE1 Gene View BACE KIAA1149

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0VA
Query on 0VA

A, B, D, E N-[N-(4-amino-3,5-dichlorobenzyl)carbamimidoyl]- 3-(4-methoxyphenyl)-5-methyl-1,2-thiazole- 4-carboxamide
C20 H19 Cl2 N5 O2 S
DPJQBOWFYJTIJB-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IOD
Query on IOD

A, B, D, E IODIDE ION
I
XMBWDFGMSWQBCA-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0VA N/A in BindingDB
N/A in BindingMoad
Ki: 40 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.65 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.217
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.33 α = 90.00
b = 131.22 β = 97.60
c = 88.95 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-27
  • Released Date: 2012-10-10
  • Deposition author(s): Muckelbauer, J.K.

Revision History

  • 2013-07-10
    Type: Citation | Details: Citation update