4FS3

Crystal structure of Staphylococcus aureus enoyl-ACP reductase in complex with NADP and AFN-1252


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 4FS3

Classification: OXIDOREDUCTASE

Total Structure Weight: 29147.76

Macromolecule Entities
Molecule Chains Length Organism Details
Enoyl-[acyl-carrier-protein] reductase [NADPH] FabI A 256 Staphylococcus aureus EC#: 1.3.1.39 IUBMB
Gene Name(s): fabI SAR0978
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0WD
Query on 0WD

A [[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin- 1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy- oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6- aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy- oxolan-2-yl]methyl hydrogen phosphate
C21 H30 N7 O17 P3
ONOVTRNLNDQWGA-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
0WE
Query on 0WE

A N-methyl-N-[(3-methyl-1-benzofuran-2-yl)methyl]- 3-(7-oxo-5,6,7,8-tetrahydro-1,8-naphthyridin- 3-yl)propanamide
C22 H23 N3 O3
WDNCPCMRTFYNIQ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0WE N/A in BindingDB
Ki: 12.8 nM  BindingMOAD
IC50: 14 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.171
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 126.27 α = 90.00
b = 126.27 β = 90.00
c = 80.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-26
  • Released Date: 2012-09-19
  • Deposition author(s): Kaplan, N., Yethon, J., Bardouniotis, E., Thalakada, R., Albert, M., Awrey, D.E., Romanov, V., Dorsey, M., Ramnauth, J., Clarke, T.E., Schmid, M.B., Berman, J., Pauls, H.W.

Revision History

  • Version 1_0: 2012-09-19

    Type: Initial release

  • Version 1_1: 2012-11-07

    Type: Database references