4FRU

Crystal structure of horse wild-type cyclophilin B

Structural Biology Knowledgebase: 4FRU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.139
  • R-Value Work: 0.116

Literature

Macromolecules
Sequence Display for 4FRU

Classification: ISOMERASE

Total Structure Weight: 20850.76

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase A 185 Equus caballus EC#: 5.2.1.8 IUBMB
Gene Name(s): PPIB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ME2
Query on ME2

A 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE
C7 H16 O3
CNJRPYFBORAQAU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.1 Å
  • R-Value Free: 0.139
  • R-Value Work: 0.116
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 64.88 α = 90.00
b = 44.07 β = 95.20
c = 60.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-06-26
  • Released Date: 2012-11-14
  • Deposition author(s): Boudko, S.P., Ishikawa, Y., Bachinger, H.P.

Revision History

  • 2013-03-13
    Type: Refinement description | Details: --
  • 2013-01-09
    Type: Citation | Details: Citation update