4FQU

Glutathionyl-Hydroquinone Reductase PcpF of Sphingobium chlorophenolicum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.203 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Structural understanding of the glutathione-dependent reduction mechanism of glutathionyl-hydroquinone reductases.

Green, A.R.Hayes, R.P.Xun, L.Kang, C.

(2012) J Biol Chem 287: 35838-35848

  • DOI: https://doi.org/10.1074/jbc.M112.395541
  • Primary Citation of Related Structures:  
    4FQU, 4G0I, 4G0K, 4G0L

  • PubMed Abstract: 

    Glutathionyl-hydroquinone reductases (GS- HQRs) are a newly identified group of glutathione transferases, and they are widely distributed in bacteria, halobacteria, fungi, and plants. GS-HQRs catalyze glutathione (GSH)-dependent reduction of glutathionyl-hydroquinones (GS-hydroquinones) to hydroquinones. GS-hydroquinones can be spontaneously formed from benzoquinones reacting with reduced GSH via Michael addition, and GS-HQRs convert the conjugates to hydroquinones. In this report we have determined the structures of two bacterial GS-HQRs, PcpF of Sphingobium chlorophenolicum and YqjG of Escherichia coli. The two structures and the previously reported structure of a fungal GS-HQR shared many features and displayed complete conservation for all the critical residues. Furthermore, we obtained the binary complex structures with GS-menadione, which in its reduced form, GS-menadiol, is a substrate. The structure revealed a large H-site that could accommodate various substituted hydroquinones and a hydrogen network of three Tyr residues that could provide the proton for reductive deglutathionylation. Mutation of the Tyr residues and the position of two GSH molecules confirmed the proposed mechanism of GS-HQRs. The conservation of GS-HQRs across bacteria, halobacteria, fungi, and plants potentiates the physiological role of these enzymes in quinone metabolism.


  • Organizational Affiliation

    School of Molecular Biosciences, Washington State University, Pullman, Washington 99164, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Putative glutathione transferase
A, B, C, D, E
A, B, C, D, E, F, G, H
313Sphingobium chlorophenolicumMutation(s): 0 
UniProt
Find proteins for Q8KN33 (Sphingobium chlorophenolicum)
Explore Q8KN33 
Go to UniProtKB:  Q8KN33
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8KN33
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.00 Å
  • R-Value Free: 0.256 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.203 
  • Space Group: P 21 3
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 242.845α = 90
b = 242.845β = 90
c = 242.845γ = 90
Software Package:
Software NamePurpose
BOSdata collection
PHENIXmodel building
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2012-09-12
    Type: Initial release
  • Version 1.1: 2013-02-13
    Changes: Database references
  • Version 1.2: 2020-07-01
    Changes: Derived calculations
  • Version 1.3: 2024-02-28
    Changes: Data collection, Database references