4FP6

DNA octamer d(gtggccac) with 2'-se modification

Structural Biology Knowledgebase: 4FP6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FP6

Classification: DNA

Total Structure Weight: 2556.06

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*(2ST)P*GP*GP*CP*CP*AP*C)-3') A 8 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
2ST
Query on 2ST
A DNA LINKING C11 H17 N2 O8 P Se DT

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.28 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.190
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 41.61 α = 90.00
b = 41.61 β = 90.00
c = 24.06 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2012-06-21
  • Released Date: 2012-08-15
  • Deposition author(s): Zhang, W., Sheng, J., Huang, Z.

Revision History

No revisions since initial release