Crystal structure of bovine CD1d with bound C16:0-alpha-galactosyl ceramide DOI:10.2210/pdb4f7e/pdb

4F7E   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Immune System Structure Weight: 45573.94 Molecule: CD1D antigen, d polypeptide Polymer: 1 Type: protein Length: 283 Chains: A Fragment: UNP residues 129-405 Organism Bos taurus Gene Name CD1D UniProtKB:   Protein Feature View | Search PDB | A1L565     Molecule: Beta-2-microglobulin Polymer: 2 Type: protein Length: 98 Chains: B Fragment: UNP residues 21-118 Organism Bos taurus Gene Name B2M UniProtKB:   Protein Feature View | Search PDB | P01888         Source Hide Polymer: 1 Scientific Name: Bos taurus   Taxonomy   Common Name: Bovine Expression System: Spodoptera frugiperda   Polymer: 2 Scientific Name: Bos taurus   Taxonomy   Common Name: Bovine Expression System: Spodoptera frugiperda   Polymer: 4 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 1Z5L  Structure of a highly potent short-chain galactosyl ceramide agonist bound to CD1d  1ZT4  The crystal structure of human CD1d with and without alpha-Galactosylceramide  4F7C        Ligand Chemical Component Hide Identifier Formula Name Interactions 0SH Search  Download  C40 H79 N O9 N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)- 3,4-dihydroxyoctadecan-2-yl]hexadecanamide   Ligand Explorer NAG Search  Download  C8 H15 N O6 N-ACETYL-D-GLUCOSAMINE   Ligand Explorer SO4 Search  Download  O4 S SULFATE ION   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 3 Domains - data from Pfam   GO Terms: 9 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Wang, J.,  Zajonc, D.M. Deposition:   2012-05-15 Release:   2012-11-14     Revision History    Hide No revisions since initial release     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   2.40 R-Value: 0.223 (obs.) R-Free: 0.276 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 55.78 α = 90.00  b = 74.48 β = 90.00  c = 122.92 γ = 90.00      Molecule of the Month Hide Major Histocompatibility Complex T-Cell Receptor