RCSB Protein Data Bank - RCSB PDB - 4F5R Structure Summary

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Open and closed ternary complex of R283K DNA polymerase beta with a dCTP analog in the same asymmetric unit

DOI:10.2210/pdb4f5r/pdb NDB ID: NA1771

4F5R

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Primary Citation

Related Citations in PDB Entry (REMARK 1) Hide

Molecular Description

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Classification:	Transferase , Lyase/dna
Structure Weight:	96674.61

Molecule:

DNA polymerase beta

Polymer:

Type:

protein

Length:

335

Chains:

A, B

EC#:

Mutation:

R283K

Organism

Homo sapiens

Gene Name

POLB

UniProtKB:

| | P06746

Molecule:

DNA (5'-D(P*GP*TP*CP*GP*G)-3')

Polymer:

Type:

dna

Length:

Chains:

C, D

Organism

synthetic construct

Molecule:

DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3')

Polymer:

Type:

dna

Length:

Chains:

G, P

Organism

synthetic construct

Molecule:

DNA (5'-D(*CP*CP*GP*AP*CP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3')

Polymer:

Type:

dna

Length:

Chains:

F, T

Organism

synthetic construct

Source

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Polymer: 1

Scientific Name:

Homo sapiens

Taxonomy

Common Name:

Human

Expression System:

Escherichia coli

Polymer: 2

Scientific Name:

Synthetic construct (synthetic construct)

Taxonomy

Polymer: 3

Scientific Name:

Synthetic construct (synthetic construct)

Taxonomy

Polymer: 4

Scientific Name:

Synthetic construct (synthetic construct)

Taxonomy

Related PDB Entries

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Identifier	Details
4F5N
4F5O
4F5P
4F5Q

Ligand Chemical Component

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Identifier		Formula	Name	Interactions
6CF Search Download	$<div style='width:300px;min-height:360px;text-align:center;'>Show Details<img src='/pdb/images/6CF_320.gif' width='300' alt='' /> <b>Ligand Name:</b> 2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine <br /><br /> <b>Synonyms:</b> n/a </div>$	C₁₀ H₁₆ F₂ N₃ O₁₂ P₃	2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine		Ligand Explorer
MN Search Download		Mn	MANGANESE (II) ION		Ligand Explorer
NA Search Download		Na	SODIUM ION		Ligand Explorer

External Domain Annotations Hide
Pfam Classification: 1 Domain - data from Pfam

GO Terms: 26 Terms - data from GO
Structural Biology Knowledgebase Data Hide