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Open ternary complex of R283K DNA polymerase beta with a one metal bound dCTP analog
DOI:10.2210/pdb4f5o/pdb   NDB ID: NA1768
4F5O
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase , Lyase/dna
    Structure Weight: 48220.75
    Molecule: DNA polymerase beta
    Polymer: 1 Type: protein Length: 335
    Chains: A
    EC#: 2.7.7.7    4.2.99   
    Mutation: R283K
    Organism: Homo sapiens
    Gene Name: Gene View for POLB
    UniProtKB: Protein Feature View | Search PDB | P06746  
    Molecule: DNA (5'-D(*CP*CP*GP*AP*CP*(8OG)P*TP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3')
    Polymer: 2 Type: dna Length: 16
    Chains: T
    Organism: synthetic construct
    Molecule: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3')
    Polymer: 3 Type: dna Length: 10
    Chains: P
    Organism: synthetic construct
    Molecule: DNA (5'-D(P*GP*TP*CP*GP*G)-3')
    Polymer: 4 Type: dna Length: 5
    Chains: D
    Organism: synthetic construct
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct (synthetic construct)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4F5N   
    4F5P   
    4F5Q   
    4F5R   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    6CF
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    6CF C10 H16 F2 N3 O12 P3
    2'-deoxy-5'-O-[(S)-{difluoro[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}(hydroxy)phosphoryl]cytidine
    6CF:4F5O
    MG
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    MG Mg
    MAGNESIUM ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    8OG
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    8OG C10 H14 N5 O8 P DG dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1768
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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