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Bacillus DNA Polymerase I Large Fragment Complex 2
DOI:10.2210/pdb4ez9/pdb   NDB ID: NA1760
4EZ9
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 149091.36
    Molecule: DNA polymerase
    Polymer: 1 Type: protein Length: 592
    Chains: A, D
    EC#: 2.7.7.7   
    Fragment: Bacillus Fragment (analogous to E. coli Klenow Fragment, unp residues 287-878)
    Mutation: D598A, F710Y
    Organism: Geobacillus kaustophilus HTA426
    Gene Names: polA GK2730
    UniProtKB: Protein Feature View | Search PDB | Q5KWC1  
    Molecule: DNA (5'-D(*CP*CP*TP*GP*AP*CP*TP*CP*(2DT))-3')
    Polymer: 2 Type: dna Length: 9
    Chains: B, E
    Details: DNA Primer Strand
    Molecule: DNA (5'-D(*CP*AP*TP*TP*AP*GP*AP*GP*TP*CP*AP*GP*G)-3')
    Polymer: 3 Type: dna Length: 13
    Chains: C, F
    Details: DNA Template Strand
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Geobacillus kaustophilus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4EZ6   
    4F2R   
    4F2S   
    4F3O   
    4F4K   
    4F8R   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    D3T
    Search 
    Download 
    D3T C10 H17 N2 O13 P3
    2',3'-DIDEOXY-THYMIDINE-5'-TRIPHOSPHATE
    MPD
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    Download 
    MPD C6 H14 O2
    (4S)-2-METHYL-2,4-PENTANEDIOL
    SO4
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    SO4 O4 S
    SULFATE ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    2DT
    Search 
    2DT C10 H15 N2 O7 P DT dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1760
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Wang, W.,  Beese, L.S.

    Deposition:   2012-05-02
    Release:   2013-07-24
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   n/a
    R-Value: n/a
    R-Free: n/a
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 93.92 α = 90.00 
    b = 108.96 β = 90.00 
    c = 149.49 γ = 90.00