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Structure of N-terminal kinase domain of RSK2 with afzelin
4EL9
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/transferase Inhibitor
    Structure Weight: 35503.48
    Molecule: Ribosomal protein S6 kinase alpha-3
    Polymer: 1 Type: protein Length: 305
    Chains: A
    EC#: 2.7.11.1   
    Fragment: N-terminal protein kinase 1 domain (UNP residues 45-346)
    Organism: Mus musculus
    Gene Names: Rps6ka3 Mapkapk1b Rps6ka-rs1 Rsk2
    UniProtKB: Protein Feature View | Search PDB | P18654  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Mus musculus   Taxonomy   Common Name: Mouse Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    3UBD  The same protein complexed with SL0101 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    AFE
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    AFE C21 H20 O10
    5,7-dihydroxy-2-(4-hydroxyphenyl)-4-oxo-4H- chromen-3-yl 6-deoxy-alpha-L-mannopyranoside
    AFE:4EL9
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    AFE
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    AFE
    N/Ain BindingDB
    N/Ain BindingMoad
    IC50: 4370 nM - data from PDBbind  
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Utepbergenov, D.,  Derewenda, U.,  Derewenda, Z.S.

    Deposition:   2012-04-10
    Release:   2012-09-05
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.55
    R-Value: 0.226 (obs.)
    R-Free: 0.226
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 99.12 α = 90.00 
    b = 40.86 β = 114.64 
    c = 83.87 γ = 90.00