4EBQ

Fab structure of anti-Vaccinia virus D8L antigen mouse IgG2a LA5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 4EBQ

Classification: IMMUNE SYSTEM

Total Structure Weight: 47699.57

Macromolecule Entities
Molecule Chains Length Organism Details
anti-Vaccinia D8L antigen monoclonal IgG2a antibody LA5, heavy chain H 221 Mus musculus Fragment: Fab
anti-Vaccinia D8L antigen monoclonal IgG2a antibody LA5, light chain L 213 Mus musculus

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

H PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

H GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

H 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

H CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.198
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 36.19 α = 90.00
b = 93.36 β = 90.00
c = 135.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-23
  • Released Date: 2012-06-06
  • Deposition author(s): Matho, M.H., Zajonc, D.M.

Revision History

  • 2012-07-25
    Type: Database references