4E92

Crystal Structure of the N-Terminal Domain of HIV-1 Capsid in Complex With Inhibitor BM4

Structural Biology Knowledgebase: 4E92 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.220

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4E92

Classification: STRUCTURAL PROTEIN / INHIBITOR

Total Structure Weight: 34526.50

Macromolecule Entities
Molecule Chains Length Organism Details
Gag protein A, B 146 Human immunodeficiency virus 1 Fragment: N-terminal domain, UNP residues 133-278
Gene Name(s): gag-pol

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0OG
Query on 0OG

A, B 3-{5-[3-ethyl-5-(5-methylfuran-2-yl)-1H-pyrazol- 1-yl]-1-[(6-oxo-1,6-dihydropyridin-3-yl)methyl]- 1H-benzimidazol-2-yl}-4-hydroxybenzoic acid
C30 H25 N5 O5
URCIOERTSWRWBE-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
0OE
Query on 0OE

A, B 4-{2-[5-(3-chlorophenyl)-1H-pyrazol-4-yl]- 1-[3-(1H-imidazol-1-yl)propyl]-1H-benzimidazol- 5-yl}benzoic acid
C29 H23 Cl N6 O2
LGXPZODGTPYYBU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.220
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.71 α = 90.00
b = 81.71 β = 90.00
c = 90.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-20
  • Released Date: 2012-04-25
  • Deposition author(s): Lemke, C.T.

Revision History

  • 2013-06-12
    Type: Citation | Details: Citation update
  • 2012-06-06
    Type: Citation | Details: Citation update