Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset) DOI:10.2210/pdb4e8t/pdb   NDB ID: NA1672

4E8T   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: RNA Structure Weight: 133505.37 Molecule: Group IIC intron Polymer: 1 Type: rna Length: 393 Chains: A Fragment: domains 1-5 Organism Oceanobacillus iheyensis Molecule: 5'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3' Polymer: 2 Type: rna Length: 8 Chains: B Details: synthetic oligonucleotide     Source Hide Polymer: 1 Scientific Name: Synthetic construct (Oceanobacillus iheyensis)   Taxonomy     Polymer: 2 Scientific Name: Synthetic construct   Taxonomy         Related PDB Entries Hide Identifier Details 4E8K    4E8M    4E8N    4E8P    4E8Q    4E8R    4E8V        Ligand Chemical Component Hide Identifier Formula Name Interactions CA Search  Download  Ca CALCIUM ION   Ligand Explorer EPE Search  Download  C8 H18 N2 O4 S 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID   Ligand Explorer K Search  Download  K POTASSIUM ION   Ligand Explorer SPM Search  Download  C10 H26 N4 SPERMINE   Ligand Explorer     Structural Biology Knowledgebase Data Hide   Nucleic Acid Database Hide View the NDB ID associated with this structure: NA1672     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Marcia, M.,  Pyle, A.M. Deposition:   2012-03-20 Release:   2012-11-14     Revision History    Hide No revisions since initial release     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   3.34 R-Value: 0.191 (obs.) R-Free: 0.235 Space Group: P 21 21 21 Unit Cell:   Length [Å] Angles [°] a = 88.46 α = 90.00  b = 95.76 β = 90.00  c = 225.69 γ = 90.00