X-ray Structure of the E224Q mutant of TcaB9, a C-3'-Methyltransferase, in Complex with S-Adenosyl-L-Homocysteine and Sugar Product DOI:10.2210/pdb4e2y/pdb

4E2Y   Display Files  close FASTA Sequence PDB File PDB File (Header) mmCIF File mmCIF File (Header) PDBML/XML File PDBML/XML File (Header)   Download Files  close FASTA Sequence PDB File (Text) PDB File (gz) mmCIF File mmCIF File (gz) PDBML/XML File PDBML/XML File (gz) Structure Factor (Text) Structure Factor (gz) Biological Assembly (gz) (A+S)   Share this Page  close Facebook Twitter LinkedIn Email Link this Page

Primary Citation       Related Citations in PDB Entry (REMARK 1) Hide     Molecular Description Hide Classification: Transferase Structure Weight: 47083.55 Molecule: TcaB9 Polymer: 1 Type: protein Length: 416 Chains: A EC#: 2.1.1    Mutation: E224Q Organism Micromonospora chalcea UniProtKB:   Protein Feature View | Search PDB | B5L6K6         Source Hide Polymer: 1 Scientific Name: Micromonospora chalcea   Taxonomy   Expression System: Escherichia coli       Related PDB Entries Hide Identifier Details 4E2W  H181N Mutant C-3'-Methyltransferase TcaB9  4E2X  Y222F Mutant C-3'-Methyltransferase TcaB9  4E2Z  H225N Mutant C-3'-Methyltransferase TcaB9  4E30  H181N/E224Q Double Mutant C-3'-Methyltransferase TcaB9  4E31  Y76F Mutant C-3'-Methyltransferase TcaB9  4E32  Wild-Type C-3'-Methyltransferase TcaB9 Complexed with SAH and dTDP-sugar substrate  4E33  Wild-Type C-3'-Methyltransferase TcaB9 Complexed with SAH and reduced dTDP-sugar substrate      Ligand Chemical Component Hide Identifier Formula Name Interactions JHZ Search  Download  C17 H27 N3 O13 P2 (2R,4S,6R)-4-amino-4,6-dimethyl-5-oxotetrahydro- 2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5- methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)- yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non- preferred name)   Ligand Explorer SAH Search  Download  C14 H20 N6 O5 S S-ADENOSYL-L-HOMOCYSTEINE   Ligand Explorer ZN Search  Download  Zn ZINC ION   Ligand Explorer     External Domain Annotations Hide Pfam Classification: 6 Domains - data from Pfam   GO Terms: 4 Terms - data from GO      Structural Biology Knowledgebase Data Hide     Data in orange boxes are gathered from external resources (when available). Reset Layout

Biological Assembly            View in 3D More Images... Biological assembly 1 assigned by authors and generated by PISA (software) Downloadable viewers: Simple Viewer Protein Workshop Ligand Explorer Kiosk Viewer Other Viewers  KiNG WebMol QuickPDB FirstGlance         MyPDB Personal Annotations Hide     Deposition Summary Hide Authors:   Bruender, N.A.,  Holden, H.M. Deposition:   2012-03-09 Release:   2012-04-25 Last Modified (REVDAT):   2012-05-30     Revision History    Hide Mouse over text for details 2012-05-30 Citation     Experimental Details Hide Method:   X-RAY DIFFRACTION Exp. Data:   Structure Factors EDS   Resolution[Å]:   1.80 R-Value: 0.178 (obs.) R-Free: 0.218 Space Group: P 21 21 2 Unit Cell:   Length [Å] Angles [°] a = 100.36 α = 90.00  b = 114.99 β = 90.00  c = 38.02 γ = 90.00