4E10

Protelomerase tela Y201A covalently complexed with substrate DNA

Structural Biology Knowledgebase: 4E10 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4E10

Classification: DNA BINDING PROTEIN / DNA

Total Structure Weight: 63014.85


Macromolecule Entities
Molecule Chains Length Organism Details
Protelomerase A 462 Agrobacterium fabrum Mutation: Y201A
Gene Name(s): telA Atu2523
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*AP*TP*AP*AP*(BRU)P*AP*AP*CP*AP*AP*(BRU)P*AP*T)-3') C 13 synthetic
DNA (5'-D(*CP*AP*TP*GP*AP*TP*AP*(BRU)P*(BRU)P*GP*(BRU)P*(BRU)P*AP*(BRU)P*(BRU)P*AP*(BRU)P*G)-3') D 18 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DT
Query on DT

A THYMIDINE-5'-MONOPHOSPHATE
C10 H15 N2 O8 P
GYOZYWVXFNDGLU-XLPZGREQSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
PTR
Query on PTR
A L-PEPTIDE LINKING C9 H12 N O6 P TYR
BRU
Query on BRU
C, D DNA LINKING C9 H12 Br N2 O8 P DU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.51 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.183
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 116.34 α = 90.00
b = 119.66 β = 111.30
c = 56.63 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-05
  • Released Date: 2013-02-13
  • Deposition author(s): Shi, K., Aihara, H.

Revision History

No revisions since initial release