4E0L

FYLLYYT segment from human Beta 2 Microglobulin (62-68) displayed on 54-membered macrocycle scaffold

Structural Biology Knowledgebase: 4E0L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.228

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4E0L

Classification: PROTEIN FIBRIL

Total Structure Weight: 7624.65

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclic pseudo-peptide FYLLYYT(ORN)KN(HAO)SA(ORN) A, B, C, D 14 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MPD
Query on MPD

A, C (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ORN
Query on ORN
A, B, C, D L-PEPTIDE LINKING C5 H12 N2 O2 ALA
HAO
Query on HAO
A, B, C, D peptide-like C10 H11 N3 O5 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.257
  • R-Value Work: 0.228
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 66.99 α = 90.00
b = 40.78 β = 98.76
c = 23.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-04
  • Released Date: 2012-12-19
  • Deposition author(s): Zhao, M., Liu, C., Michael, S.R., Eisenberg, D.

Revision History

  • 2013-06-19
    Type: Citation | Details: Citation update
  • 2012-12-19
    Type: Citation | Details: Citation update