4DX4

Lambda-[Ru(TAP)2(DPPZ-(Me2))]2+ Bound to Synthetic DNA Oligomer

Structural Biology Knowledgebase: 4DX4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.51 Å
  • R-Value Free: 0.173
  • R-Value Work: 0.141

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DX4

Classification: DNA

Total Structure Weight: 3982.14

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*TP*CP*GP*GP*CP*GP*CP*CP*GP*A)-3' A 10 synthetic

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RML
Query on RML

(11,12-dimethyldipyrido[3,2-a:2',3'-c]phenazine- kappa~2~N~4~,N~5~)[bis(pyrazino[2,3-f]quinoxaline- kappa~2~N~1~,N~10~)]ruthenium(2+)
4, (Synonym)
C40 H26 N12 Ru
GGHWDMRPXFPGCU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BA
Query on BA

A BARIUM ION
Ba
XDFCIPNJCBUZJN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.51 Å
  • R-Value Free: 0.173
  • R-Value Work: 0.141
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.48 α = 90.00
b = 42.48 β = 90.00
c = 39.73 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2012-02-27
  • Released Date: 2013-03-06
  • Deposition author(s): Ruiz Morte, S., Hall, J.P., Cardin, C.J.

Revision History

No revisions since initial release