4DSA

Crystal Structure of DPP-IV with Compound C1

Structural Biology Knowledgebase: 4DSA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 4DSA

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 169379.20

Macromolecule Entities
Molecule Chains Length Organism Details
Dipeptidyl peptidase 4 A, B 728 Homo sapiens EC#: 3.4.14.5 IUBMB
Fragment: extracellular domain (residues 39-766)
Gene Name(s): DPP4 Gene View ADCP2 CD26
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
D1C
Query on D1C

A 4-[({[(2R)-2-amino-3-(2,4,5-trifluorophenyl)propyl]sulfamoyl}amino)methyl]benzenesulfonamide
C16 H19 F3 N4 O4 S2
DJEOZKIXGQHLQG-GFCCVEGCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.198
  • Space Group: P 32
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.68 α = 90.00
b = 78.68 β = 90.00
c = 289.85 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-18
  • Released Date: 2013-02-27
  • Deposition author(s): Xiong, B., Zhu, L.R., Chen, D.Q., Zhao, Y.L., Jiang, F., Shen, J.K.

Revision History

No revisions since initial release