4DGV

Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the broadly neutralizing antibody HCV1, P2(1) form


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 4DGV

Classification: IMMUNE SYSTEM / VIRAL PROTEIN

Total Structure Weight: 49593.40

Macromolecule Entities
Molecule Chains Length Organism Details
HCV1 Heavy Chain H 226 Homo sapiens Fragment: Fab
HCV1 Light Chain L 213 Homo sapiens
E2 peptide A 13 Hepatitis c virus Fragment: UNP residues 51-62
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
K
Query on K

H POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

H SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.170
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 44.04 α = 90.00
b = 75.30 β = 91.53
c = 60.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-01-26
  • Released Date: 2012-05-23
  • Deposition author(s): Kong, L., Wilson, I.A., Law, M.

Revision History

  • 2012-06-06
    Type: Database references
  • 2012-06-27
    Type: Database references