POP-OUT | CLOSE
The crystal structure of Chelerythrine bound to DNA d(CGTACG)
DOI:10.2210/pdb4d9y/pdb   NDB ID: NA1542
4D9Y
Primary Citation
 
 
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Molecular Description Hide
    Classification: DNA
    Structure Weight: 7625.38
    Molecule: DNA (5'-D(*CP*GP*TP*AP*CP*G)-3')
    Polymer: 1 Type: dna Length: 6
    Chains: A, B, C, D
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    3NP6  The same sequence complexed with Berberine 
    3NX5  The same sequence complexed with Sanguinarine 
    4D9X  The same sequence complexed with Coptisine 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name Interactions
    CA
    Search 
    Download      		CA Ca
    CALCIUM ION
    CTI
    Search 
    Download      		CTI C21 H18 N O4
    1,2-dimethoxy-12-methyl[1,3]benzodioxolo[5,6- c]phenanthridin-12-ium
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA1542
     
 
Data in orange boxes are gathered from external resources (when available).
Reset Layout
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Ferraroni, M.,  Bazzicalupi, C.,  Gratteri, P.,  Bilia, A.R.

    Deposition:   2012-01-12
    Release:   2013-01-23
    Last Modified (REVDAT):   2013-03-13
     
  •   Revision History    Hide
    Mouse over text for details
    2013-03-13
    Refinement description
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.10
    R-Value: 0.220 (work)
    R-Free: 0.314
    Space Group: P 32 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 30.23 α = 90.00 
    b = 30.23 β = 90.00 
    c = 119.25 γ = 120.00