4C63

ULTRA HIGH RESOLUTION DICKERSON-DREW DODECAMER B-DNA WITH 5- METHYLCYSTOSINE MODIFICATION

Structural Biology Knowledgebase: 4C63 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.32 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.150

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4C63

Classification: DNA

Total Structure Weight: 7379.20

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*5CMP*GP*CP*GP)-3' A, B 12 Synthetic construct 5-METHYL CYTOSINE AT POSITION C9 STRAND A AND C21 STRAND B, DICKERSON-DREW SEQUENCE DODECAMER

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
5CM
Query on 5CM
A, B DNA LINKING C10 H16 N3 O7 P DC

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.32 Å
  • R-Value Free: 0.185
  • R-Value Work: 0.150
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 24.46 α = 90.00
b = 40.06 β = 90.00
c = 65.41 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2013-09-17
  • Released Date: 2013-10-02
  • Deposition author(s): Mcdonough, M., El-Sagheer, A.H., Brown, T., Schofield, C.J.

Revision History

  • 2014-05-07
    Type: Polymer description | Details: SEQRES
  • 2014-02-12
    Type: Citation | Details: JRNL
  • 2014-02-12
    Type: Sequence database correspondence | Details: DBREF
  • 2013-12-11
    Type: Citation | Details: JRNL