4C57

Structure of GAK kinase in complex with a nanobody

Structural Biology Knowledgebase: 4C57 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.178

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4C57

Classification: TRANSFERASE

Total Structure Weight: 109003.90

Macromolecule Entities
Molecule Chains Length Organism Details
CYCLIN-G-ASSOCIATED KINASE A, B 340 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: KINASE DOMAIN RESIDUES 14-351
Gene Name(s): GAK Gene View
NANOBODY C, D 141 Lama glama

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FEF
Query on FEF

A, B (2Z,3E)-2,3'-BIINDOLE-2',3(1H,1'H)-DIONE 3- {O-[(3R)-3,4-DIHYDROXYBUTYL]OXIME}
C20 H19 N3 O4
RKUMZEVCWKZXFV-YOCZKUTFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.178
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 75.16 α = 90.00
b = 86.66 β = 96.44
c = 83.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-09-10
  • Released Date: 2013-10-09
  • Deposition author(s): Chaikuad, A., Keates, T., Krojer, T., Allerston, C.K., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Muller-Knapp, S.

Revision History

  • 2014-04-09
    Type: Citation | Details: JRNL