4C16
E-selectin lectin, EGF-like and two SCR domains complexed with glycomimetic antagonist
- PDB DOI: https://doi.org/10.2210/pdb4C16/pdb
- Classification: CELL ADHESION
- Organism(s): Homo sapiens
- Expression System: Cricetulus griseus
- Mutation(s): No 
- Deposited: 2013-08-09 Released: 2014-08-20 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.93 Å
- R-Value Free: 0.232 
- R-Value Work: 0.180 
- R-Value Observed: 0.183 
This is version 1.4 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
E-SELECTIN | 280 | Homo sapiens | Mutation(s): 0  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P16581 (Homo sapiens) Explore P16581  Go to UniProtKB:  P16581 | |||||
PHAROS:  P16581 GTEx:  ENSG00000007908  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P16581 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 6 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
GAL Query on GAL | L [auth A], X [auth B] | beta-D-galactopyranose C6 H12 O6 WQZGKKKJIJFFOK-FPRJBGLDSA-N | |||
4WC Query on 4WC | K [auth A], W [auth B] | (S)-CYCLOHEXYL LACTIC ACID C9 H16 O3 WMHUKKRNWMPXKB-QMMMGPOBSA-N | |||
FUC Query on FUC | N [auth A], Z [auth B] | alpha-L-fucopyranose C6 H12 O5 SHZGCJCMOBCMKK-SXUWKVJYSA-N | |||
Q6Z Query on Q6Z | M [auth A], Y [auth B] | (1R,2R,3S)-3-methylcyclohexane-1,2-diol C7 H14 O2 VFRVYGUCOZPHEQ-RRKCRQDMSA-N | |||
CA Query on CA | J [auth A], V [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.93 Å
- R-Value Free: 0.232 
- R-Value Work: 0.180 
- R-Value Observed: 0.183 
- Space Group: P 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 52.582 | α = 74.4 |
b = 56.917 | β = 87.11 |
c = 59.684 | γ = 88.26 |
Software Name | Purpose |
---|---|
BUSTER | refinement |
XDS | data reduction |
SCALA | data scaling |
PHASER | phasing |
Entry History 
Deposition Data
- Released Date: 2014-08-20  Deposition Author(s): Preston, R.C., Jakob, R.P., Binder, F.P.C., Sager, C.P., Ernst, B., Maier, T.
Revision History (Full details and data files)
- Version 1.0: 2014-08-20
Type: Initial release - Version 1.1: 2015-07-08
Changes: Database references - Version 1.2: 2016-01-27
Changes: Database references - Version 1.3: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Derived calculations, Other, Structure summary - Version 1.4: 2023-12-20
Changes: Data collection, Database references, Refinement description, Structure summary