4BUH

Human IgE against the major allergen Bet v 1 - Crystal structure of clone M0418 scFv


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.173
  • R-Value Work: 0.145

Literature

Macromolecules
Sequence Display for 4BUH

Classification: IMMUNE SYSTEM

Total Structure Weight: 57785.20

Macromolecule Entities
Molecule Chains Length Organism Details
CLONE M0418 SCFV A, B 269 Homo sapiens

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PEG
Query on PEG

A DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
A, B L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.3 Å
  • R-Value Free: 0.173
  • R-Value Work: 0.145
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 99.50 α = 90.00
b = 76.42 β = 118.07
c = 70.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-20
  • Released Date: 2013-11-20
  • Deposition author(s): Davies, A.M., Levin, M., Lilljekvist, M., Carlsson, F., Gould, H.J., Sutton, B.J., Ohlin, M.

Revision History

  • Version 1_0: 2013-11-20

    Type: Initial release

  • Version 1_1: 2014-02-05

    Type: Database references

  • Version 1_2: 2015-01-14

    Type: Other