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Thermus thermophilus ribosome
DOI:10.2210/pdb4btd/pdb   NDB ID: NA2609
4BTD
Split Entry
The asymmetric unit for this structure is composed of multiple PDB entries:
4BTC   4BTD  
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Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 1428617.47
    Molecule: 50S RIBOSOMAL PROTEIN L27
    Polymer: 1 Type: protein Length: 84
    Chains: 0
    Organism Thermus thermophilus HB8
    Gene Names rpmA TTHA1782
    UniProtKB:   Protein Feature View | Search PDB | P60493  
    Molecule: 50S RIBOSOMAL PROTEIN L28
    Polymer: 2 Type: protein Length: 97
    Chains: 1
    Organism Thermus thermophilus HB8
    Gene Names rpmB TTHA0042
    UniProtKB:   Protein Feature View | Search PDB | P60494  
    Molecule: 50S RIBOSOMAL PROTEIN L29
    Polymer: 3 Type: protein Length: 71
    Chains: 2
    Organism Thermus thermophilus HB8
    Gene Names rpmC TTHA1684
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP6  
    Molecule: 50S RIBOSOMAL PROTEIN L30
    Polymer: 4 Type: protein Length: 60
    Chains: 3
    Organism Thermus thermophilus HB8
    Gene Names rpmD TTHA1674
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ6  
    Molecule: 50S RIBOSOMAL PROTEIN L31
    Polymer: 5 Type: protein Length: 71
    Chains: 4
    Organism Thermus thermophilus HB8
    Gene Names rpmE TTHA1073
    UniProtKB:   Protein Feature View | Search PDB | Q5SJE1  
    Molecule: 50S RIBOSOMAL PROTEIN L32
    Polymer: 6 Type: protein Length: 59
    Chains: 5
    Organism Thermus thermophilus HB8
    Gene Names rpmF rpl32 TTHA0418
    UniProtKB:   Protein Feature View | Search PDB | P80339  
    Molecule: 50S RIBOSOMAL PROTEIN L33
    Polymer: 7 Type: protein Length: 53
    Chains: 6
    Organism Thermus thermophilus HB8
    Gene Names rpmG rpl33 TTHA0250
    UniProtKB:   Protein Feature View | Search PDB | P35871  
    Molecule: 50S RIBOSOMAL PROTEIN L34
    Polymer: 8 Type: protein Length: 48
    Chains: 7
    Organism Thermus thermophilus HB8
    Gene Names rpmH rpl34 TTHA0446
    UniProtKB:   Protein Feature View | Search PDB | P80340  
    Molecule: 50S RIBOSOMAL PROTEIN L35
    Polymer: 9 Type: protein Length: 64
    Chains: 8
    Organism Thermus thermophilus HB8
    Gene Names rpmI TTHA0552
    UniProtKB:   Protein Feature View | Search PDB | Q5SKU1  
    Molecule: 50S RIBOSOMAL PROTEIN L36
    Polymer: 10 Type: protein Length: 37
    Chains: 9
    Organism Thermus thermophilus HB8
    Gene Names rpmJ TTHA1668
    UniProtKB:   Protein Feature View | Search PDB | Q5SHR2  
    Molecule: 23S RIBOSOMAL RNA
    Polymer: 11 Type: rna Length: 2915
    Chains: A
    Organism Thermus thermophilus HB8
    Molecule: 5S RIBOSOMAL RNA
    Polymer: 12 Type: rna Length: 122
    Chains: B
    Organism Thermus thermophilus HB8
    Molecule: RIBOSOMAL PROTEIN L1
    Polymer: 13 Type: protein Length: 228
    Chains: C
    Organism Thermus thermophilus HB8
    Gene Names rplA TTHA0246
    UniProtKB:   Protein Feature View | Search PDB | Q5SLP7  
    Molecule: 50S RIBOSOMAL PROTEIN L2
    Polymer: 14 Type: protein Length: 275
    Chains: D
    Organism Thermus thermophilus HB8
    Gene Names rplB TTHA1689
    UniProtKB:   Protein Feature View | Search PDB | P60405  
    Molecule: 50S RIBOSOMAL PROTEIN L3
    Polymer: 15 Type: protein Length: 206
    Chains: E
    Organism Thermus thermophilus HB8
    Gene Names rplC TTHA1692
    UniProtKB:   Protein Feature View | Search PDB | Q5SHN8  
    Molecule: 50S RIBOSOMAL PROTEIN L4
    Polymer: 16 Type: protein Length: 210
    Chains: F
    Organism Thermus thermophilus HB8
    Gene Names rplD TTHA1691
    UniProtKB:   Protein Feature View | Search PDB | Q5SHN9  
    Molecule: 50S RIBOSOMAL PROTEIN L5
    Polymer: 17 Type: protein Length: 181
    Chains: G
    Organism Thermus thermophilus HB8
    Gene Names rplE TTHA1680
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ0  
    Molecule: 50S RIBOSOMAL PROTEIN L6
    Polymer: 18 Type: protein Length: 180
    Chains: H
    Organism Thermus thermophilus HB8
    Gene Names rplF TTHA1677
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ3  
    Molecule: CHAIN J
    Polymer: 19 Type: protein Length: 130
    Chains: J
    Organism Thermus thermophilus HB8
    Molecule: CHAIN K
    Polymer: 20 Type: protein Length: 140
    Chains: K
    Organism Thermus thermophilus HB8
    Molecule: CHAIN L
    Polymer: 21 Type: protein Length: 71
    Chains: L
    Organism Thermus thermophilus HB8
    Molecule: 50S RIBOSOMAL PROTEIN L13
    Polymer: 22 Type: protein Length: 140
    Chains: N
    Organism Thermus thermophilus HB8
    Gene Names rplM TTHA1465
    UniProtKB:   Protein Feature View | Search PDB | P60488  
    Molecule: 50S RIBOSOMAL PROTEIN L14
    Polymer: 23 Type: protein Length: 122
    Chains: O
    Organism Thermus thermophilus HB8
    Gene Names rplN TTHA1682
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP8  
    Molecule: 50S RIBOSOMAL PROTEIN L15
    Polymer: 24 Type: protein Length: 149
    Chains: P
    Organism Thermus thermophilus HB8
    Gene Names rplO TTHA1673
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ7  
    Molecule: 50S RIBOSOMAL PROTEIN L16
    Polymer: 25 Type: protein Length: 141
    Chains: Q
    Organism Thermus thermophilus HB8
    Gene Names rplP TTHA1685
    UniProtKB:   Protein Feature View | Search PDB | P60489  
    Molecule: 50S RIBOSOMAL PROTEIN L17
    Polymer: 26 Type: protein Length: 117
    Chains: R
    Organism Thermus thermophilus HB8
    Gene Names rplQ rpl17 TTHA1663
    UniProtKB:   Protein Feature View | Search PDB | Q9Z9H5  
    Molecule: 50S RIBOSOMAL PROTEIN L18
    Polymer: 27 Type: protein Length: 111
    Chains: S
    Organism Thermus thermophilus HB8
    Gene Names rplR TTHA1676
    UniProtKB:   Protein Feature View | Search PDB | Q5SHQ4  
    Molecule: 50S RIBOSOMAL PROTEIN L19
    Polymer: 28 Type: protein Length: 146
    Chains: T
    Organism Thermus thermophilus HB8
    Gene Names rplS TTHA1031
    UniProtKB:   Protein Feature View | Search PDB | P60490  
    Molecule: 50S RIBOSOMAL PROTEIN L20
    Polymer: 29 Type: protein Length: 117
    Chains: U
    Organism Thermus thermophilus HB8
    Gene Names rplT TTHA0553
    UniProtKB:   Protein Feature View | Search PDB | P60491  
    Molecule: 50S RIBOSOMAL PROTEIN L21
    Polymer: 30 Type: protein Length: 101
    Chains: V
    Organism Thermus thermophilus HB8
    Gene Names rplU TTHA1783
    UniProtKB:   Protein Feature View | Search PDB | P60492  
    Molecule: 50S RIBOSOMAL PROTEIN L22
    Polymer: 31 Type: protein Length: 113
    Chains: W
    Organism Thermus thermophilus HB8
    Gene Names rplV TTHA1687
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP3  
    Molecule: 50S RIBOSOMAL PROTEIN L23
    Polymer: 32 Type: protein Length: 95
    Chains: X
    Organism Thermus thermophilus HB8
    Gene Names rplW TTHA1690
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP0  
    Molecule: 50S RIBOSOMAL PROTEIN L24
    Polymer: 33 Type: protein Length: 109
    Chains: Y
    Organism Thermus thermophilus HB8
    Gene Names rplX TTHA1681
    UniProtKB:   Protein Feature View | Search PDB | Q5SHP9  
    Molecule: 50S RIBOSOMAL PROTEIN L25
    Polymer: 34 Type: protein Length: 205
    Chains: Z
    Organism Thermus thermophilus HB8
    Gene Names rplY rpl25 rptL5 TTHA1589
    UniProtKB:   Protein Feature View | Search PDB | Q5SHZ1  
     
  •   Structure Validation Hide

    Download full validation report    

     
  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 2
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 3
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 4
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 5
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 6
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 7
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 8
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 9
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 10
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 11
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 12
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 13
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 14
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 15
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 16
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 17
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 18
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 19
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 20
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 21
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 22
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 23
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 24
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 25
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 26
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 27
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 28
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 29
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 30
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 31
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 32
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 33
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
    Polymer: 34
    Scientific Name: Thermus thermophilus hb8   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    MG
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    MG Mg
    MAGNESIUM ION
    ZN
    Search 
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    UNK
    Search 
    UNK C4 H9 N O2 lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2609
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Composite of PDB entries (4BTC and 4BTD)
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Chen, Y.,  Feng, S.,  Kumar, V.,  Gao, Y.G.

    Deposition:   2013-06-14
    Release:   2013-08-07
    Last Modified (REVDAT):   2013-09-18
     
  •   Revision History    Hide
    Mouse over text for details
    2013-09-18
    Citation
    2013-08-14
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.95
    R-Value: 0.210 (obs.)
    R-Free: 0.244
    Space Group: P 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 202.90 α = 90.00 
    b = 242.63 β = 99.60 
    c = 309.32 γ = 90.00