4BP0

Crystal structure of the closed form of Pseudomonas aeruginosa SPM-1


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.152

Literature

Macromolecules
Sequence Display for 4BP0

Classification: HYDROLASE

Total Structure Weight: 113347.73

Macromolecule Entities
Molecule Chains Length Organism Details
METALLO-B-LACTAMASE A, B, C, D 250 Pseudomonas aeruginosa EC#: 3.5.2.6 IUBMB
Fragment: RESIDUES 29-276
Gene Name(s): spm-1 bla SPM-1 blaSPM-1 CCBH4851_00081 ICEPaeSP_00028
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A, B, C, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.152
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 45.65 α = 90.00
b = 83.55 β = 90.00
c = 282.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-22
  • Released Date: 2014-06-18
  • Deposition author(s): McDonough, M.A., Brem, J., Schofield, C.J.

Revision History

  • Version 1_0: 2014-06-18

    Type: Initial release

  • Version 1_1: 2015-06-24

    Type: Database references