4BDW

The structure of the FnI-EGF tandem domain of coagulation factor XII in complex with Holmium

Structural Biology Knowledgebase: 4BDW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 4BDW

Classification: HYDROLASE

Total Structure Weight: 9904.24

Macromolecule Entities
Molecule Chains Length Organism Details
COAGULATION FACTOR XIIA HEAVY CHAIN A 85 Homo sapiens EC#: 3.4.21.38 IUBMB
Fragment: FNI-EGF, RESIDUES 133-215
Mutation: A77P
Gene Name(s): F12 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HO
Query on HO

A HOLMIUM ATOM
Ho
KJZYNXUDTRRSPN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.219
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 96.25 α = 90.00
b = 96.25 β = 90.00
c = 47.33 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-08
  • Released Date: 2013-02-13
  • Deposition author(s): Beringer, D.X., Kroon-Batenburg, L.M.J.

Revision History

  • 2013-04-17
    Type: Entry title | Details: TITLE
  • 2013-04-17
    Type: Other | Details: REMARK 900
  • 2013-02-20
    Type: Citation | Details: JRNL