4B8W

Crystal structure of human GDP-L-fucose synthase with bound NADP and GDP, tetragonal crystal form

Structural Biology Knowledgebase: 4B8W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4B8W

Classification: OXIDOREDUCTASE

Total Structure Weight: 74118.83

Macromolecule Entities
Molecule Chains Length Organism Details
GDP-L-FUCOSE SYNTHASE A, B 319 Homo sapiens EC#: 1.1.1.271 IUBMB
Gene Name(s): TSTA3 Gene View SDR4E1

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GDP
Query on GDP

A, B GUANOSINE-5'-DIPHOSPHATE
C10 H15 N5 O11 P2
QGWNDRXFNXRZMB-UUOKFMHZSA-N
Ligand Explorer
 
JSmol
NAP
Query on NAP

A, B NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.252
  • R-Value Work: 0.201
  • Space Group: P 42
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 111.47 α = 90.00
b = 111.47 β = 90.00
c = 46.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-31
  • Released Date: 2012-11-21
  • Deposition author(s): Vollmar, M., Krojer, T., Shafqat, N., Rojkova, A., Bunkoczi, G., Pike, A., Chaikuat, A., Carpenter, E., Yue, W.W., Kavanagh, K., Von Delft, F., Weigelt, J., Arrowsmith, C.H., Bountra, C., Edwards, A., Oppermann, U.

Revision History

  • 2012-12-05
    Type: Entry authorship | Details: AUTHOR