4B4J

1.25 A Structure of Lysozyme Crystallized with (RS)-2-methyl-2,4- pentanediol

Structural Biology Knowledgebase: 4B4J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.156
  • R-Value Work: 0.130

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4B4J

Classification: HYDROLASE

Total Structure Weight: 14638.49

Macromolecule Entities
Molecule Chains Length Organism Details
LYSOZYME C A 129 Gallus gallus EC#: 3.2.1.17 IUBMB
Gene Name(s): LYZ Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MRD
Query on MRD

A (4R)-2-METHYLPENTANE-2,4-DIOL
C6 H14 O2
SVTBMSDMJJWYQN-RXMQYKEDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.156
  • R-Value Work: 0.130
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 77.67 α = 90.00
b = 77.67 β = 90.00
c = 37.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-30
  • Released Date: 2012-08-22
  • Deposition author(s): Jakoncic, J., Berger, J., Stauber, M., Axelbaum, A., Asherie, N.

Revision History

  • 2016-01-27
    Type: Citation | Details: JRNL
  • 2015-03-11
    Type: Citation | Details: JRNL
  • 2013-03-27
    Type: Geometry validation | Details: REMARK 500
  • 2013-03-27
    Type: Atom nomenclature | Details: HETATM
  • 2013-03-27
    Type: Other | Details: ANISOU