4AMK

Fab fragment of antiporphrin antibody 13g10

Structural Biology Knowledgebase: 4AMK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4AMK

Classification: IMMUNE SYSTEM

Total Structure Weight: 45929.86

Macromolecule Entities
Molecule Chains Length Organism Details
FAB13G10, HEAVY CHAIN H 217 Mus musculus
FAB13G10, LIGHT CHAIN L 212 Mus musculus

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

H, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

L MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.275
  • R-Value Work: 0.224
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.80 α = 90.00
b = 62.75 β = 91.65
c = 113.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-03-12
  • Released Date: 2012-10-31
  • Deposition author(s): Mahy, J.P., Golinelli-Pimpaneau, B.

Revision History

  • 2015-03-04
    Type: Citation | Details: REMARK 1
  • 2014-10-22
    Type: Citation | Details: JRNL