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von Hippel-Lindau protein-ElonginB-ElonginC complex, bound to Hif1- alpha peptide
4AJY
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription
    Structure Weight: 45315.76
    Molecule: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2
    Polymer: 1 Type: protein Length: 118
    Chains: B
    Organism: Homo sapiens
    Gene Name: Gene View for TCEB2
    UniProtKB: Protein Feature View | Search PDB | Q15370  
    Molecule: TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1
    Polymer: 2 Type: protein Length: 97
    Chains: C
    Fragment: 17-112
    Details: EXTRA MET AT N-TERMINUS DUE TO CLONING
    Organism: Homo sapiens
    Gene Name: Gene View for TCEB1
    UniProtKB: Protein Feature View | Search PDB | Q15369  
    Molecule: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA
    Polymer: 3 Type: protein Length: 19
    Chains: H
    Fragment: RESIDUES 559-577
    Mutation: YES
    Organism: Homo sapiens
    Gene Names: Gene View for HIF1A BHLHE78 MOP1 PASD8
    UniProtKB: Protein Feature View | Search PDB | Q16665  
    Molecule: VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR
    Polymer: 4 Type: protein Length: 163
    Chains: V
    Fragment: RESIDUES 54-213
    Organism: Homo sapiens
    Gene Name: Gene View for VHL
    UniProtKB: Protein Feature View | Search PDB | P40337  
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
    Polymer: 3
    Scientific Name: Synthetic construct (Homo sapiens)   Taxonomy    
    Polymer: 4
    Scientific Name: Homo sapiens   Taxonomy   Common Name: Human Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1D7G  A MODEL FOR THE COMPLEX BETWEEN THE HYPOXIA-INDUCIBLE FACTOR-1 (HIF-1) AND ITS CONSENSUS DEOXYRIBONUCLEIC ACID SEQUENCE 
    1H2K  FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT PEPTIDE 
    1H2L  FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT PEPTIDE 
    1H2M  FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH HIF-1 ALPHA FRAGMENT PEPTIDE 
    1L3E  NMR STRUCTURES OF THE HIF-1ALPHA CTAD/P300 CH1 COMPLEX 
    1L8C  STRUCTURAL BASIS FOR HIF-1ALPHA/CBP RECOGNITION IN THECELLULAR HYPOXIC RESPONSE 
    1LM8  STRUCTURE OF A HIF-1A-PVHL-ELONGINB-ELONGINC COMPLEX 
    1LQB  CRYSTAL STRUCTURE OF A HYDROXYLATED HIF-1 ALPHA PEPTIDEBOUND TO THE PVHL/ELONGIN-C/ELONGIN-B COMPLEX 
    1VCB  THE VHL-ELONGINC-ELONGINB STRUCTURE 
    2C9W  CRYSTAL STRUCTURE OF SOCS-2 IN COMPLEX WITH ELONGIN- B AND ELONGIN-C AT 1.9A RESOLUTION 
    2IZV  CRYSTAL STRUCTURE OF SOCS-4 IN COMPLEX WITH ELONGIN- B AND ELONGIN-C AT 2.55A RESOLUTION 
    2XAI  CRYSTAL STRUCTURE OF ANKYRIN REPEAT AND SOCS BOX- CONTAINING PROTEIN 9 (ASB9) IN COMPLEX WITH ELONGINB AND ELONGINC 
    3ZRC  PVHL54-213-ELOB-ELOC COMPLEX (4R)-4-HYDROXY-1-[(3- METHYLISOXAZOL-5-YL)ACETYL]-N-[4-(1,3-OXAZOL-5-YL )BENZYL]-L-PROLINAMIDE BOUND 
    3ZRF  PVHL54-213-ELOB-ELOC COMPLEX_APO 
    3ZTC  PVHL54-213-ELOB-ELOC COMPLEX _ (2S,4R)-N-((1,1'- BIPHENYL)-4-YLMETHYL)-4-HYDROXY-1-(2-(3-METHYLISOXAZOL -5-YL)ACETYL)PYRROLIDINE-2-CARBOXAMIDE 
    3ZTD  PVHL54-213-ELOB-ELOC COMPLEX _ METHYL 4-(((2S,4R)- 4-HYDROXY-1-(2-(3-METHYLISOXAZOL-5-YL)ACETYL) PYRROLIDINE-2-CARBOXAMIDO)METHYL)BENZOATE 
    3ZUN  PVHL54-213-ELOB-ELOC COMPLEX_(2S,4R)-4-HYDROXY-1-( 2-(3-METHYLISOXAZOL-5-YL)ACETYL)-N-(4-NITROBENZYL) PYRROLIDINE-2-CARBOXAMIDE BOUND 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    GOL
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    GOL C3 H8 O3
    GLYCEROL
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    HYP
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    HYP C5 H9 N O3 PRO lPeptideLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 generated by PISA (software)
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