4AGZ

CRYSTAL STRUCTURE OF THE DB 985-D(CGCGAATTCGCG)2 COMPLEX AT 1.25 A RESOLUTION.

Structural Biology Knowledgebase: 4AGZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.155

Literature

Macromolecules
Sequence Display for 4AGZ

Classification: DNA

Total Structure Weight: 7770.17

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*GP)-3' A, B 12 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
D98
Query on D98

B 2-(4'-CARBAMIMIDOYL-2'-HYDROXYBIPHENYL-4- YL)-1H-BENZIMIDAZOLE-5-CARBOXIMIDAMIDE
C21 H18 N6 O
VYJOWVQQJBILOA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.155
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 24.03 α = 90.00
b = 39.90 β = 90.00
c = 65.78 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2012-02-02
  • Released Date: 2013-01-16
  • Deposition author(s): Munnur, D.G., Mitchell, E.P., Forsyth, V.T., Teixeira, S.C.M., Neidle, S.

Revision History

No revisions since initial release