Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit
4ADV
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Translation
    Structure Weight: 815561.07
    Molecule: 16S RIBOSOMAL RNA
    Polymer: 1 Type: rna Length: 1542
    Chains: A
    Molecule: 30S RIBOSOMAL PROTEIN S2
    Polymer: 2 Type: protein Length: 240
    Chains: B
    Organism: Escherichia coli
    Molecule: 30S RIBOSOMAL PROTEIN S3
    Polymer: 3 Type: protein Length: 232
    Chains: C
    Organism: Escherichia coli
    Gene Names: rpsC b3314 JW3276
    UniProtKB: Protein Feature View | Search PDB | P0A7V3  
    Molecule: 30S RIBOSOMAL PROTEIN S4
    Polymer: 4 Type: protein Length: 205
    Chains: D
    Organism: Escherichia coli
    Gene Names: rpsD ramA b3296 JW3258
    UniProtKB: Protein Feature View | Search PDB | P0A7V8  
    Molecule: 30S RIBOSOMAL PROTEIN S5
    Polymer: 5 Type: protein Length: 166
    Chains: E
    Organism: Escherichia coli
    Gene Names: rpsE spc b3303 JW3265
    UniProtKB: Protein Feature View | Search PDB | P0A7W1  
    Molecule: 30S RIBOSOMAL PROTEIN S6
    Polymer: 6 Type: protein Length: 135
    Chains: F
    Organism: Escherichia coli
    Gene Names: rpsF b4200 JW4158
    UniProtKB: Protein Feature View | Search PDB | P02358  
    Molecule: 30S RIBOSOMAL PROTEIN S7
    Polymer: 7 Type: protein Length: 178
    Chains: G
    Organism: Escherichia coli
    Gene Names: rpsG b3341 JW3303
    UniProtKB: Protein Feature View | Search PDB | P02359  
    Molecule: 30S RIBOSOMAL PROTEIN S8
    Polymer: 8 Type: protein Length: 129
    Chains: H
    Organism: Escherichia coli
    Gene Names: rpsH b3306 JW3268
    UniProtKB: Protein Feature View | Search PDB | P0A7W7  
    Molecule: 30S RIBOSOMAL PROTEIN S9
    Polymer: 9 Type: protein Length: 129
    Chains: I
    Organism: Escherichia coli
    Molecule: 30S RIBOSOMAL PROTEIN S10
    Polymer: 10 Type: protein Length: 103
    Chains: J
    Organism: Escherichia coli
    Gene Names: rpsJ nusE b3321 JW3283
    UniProtKB: Protein Feature View | Search PDB | P0A7R5  
    Molecule: 30S RIBOSOMAL PROTEIN S11
    Polymer: 11 Type: protein Length: 128
    Chains: K
    Organism: Escherichia coli
    Gene Names: rpsK b3297 JW3259
    UniProtKB: Protein Feature View | Search PDB | P0A7R9  
    Molecule: 30S RIBOSOMAL PROTEIN S12
    Polymer: 12 Type: protein Length: 123
    Chains: L
    Organism: Escherichia coli
    Gene Names: rpsL strA b3342 JW3304
    UniProtKB: Protein Feature View | Search PDB | P0A7S3  
    Molecule: 30S RIBOSOMAL PROTEIN S13
    Polymer: 13 Type: protein Length: 117
    Chains: M
    Organism: Escherichia coli
    Gene Names: rpsM b3298 JW3260
    UniProtKB: Protein Feature View | Search PDB | P0A7S9  
    Molecule: 30S RIBOSOMAL PROTEIN S14
    Polymer: 14 Type: protein Length: 100
    Chains: N
    Organism: Escherichia coli
    Gene Names: rpsN b3307 JW3269
    UniProtKB: Protein Feature View | Search PDB | P0AG59  
    Molecule: 30S RIBOSOMAL PROTEIN S15
    Polymer: 15 Type: protein Length: 89
    Chains: O
    Organism: Escherichia coli
    Gene Names: rpsO secC b3165 JW3134
    UniProtKB: Protein Feature View | Search PDB | P0ADZ4  
    Molecule: 30S RIBOSOMAL PROTEIN S16
    Polymer: 16 Type: protein Length: 82
    Chains: P
    Organism: Escherichia coli
    Gene Names: rpsP b2609 JW2590
    UniProtKB: Protein Feature View | Search PDB | P0A7T3  
    Molecule: 30S RIBOSOMAL PROTEIN S17
    Polymer: 17 Type: protein Length: 83
    Chains: Q
    Organism: Escherichia coli
    Gene Names: rpsQ neaA b3311 JW3273
    UniProtKB: Protein Feature View | Search PDB | P0AG63  
    Molecule: 30S RIBOSOMAL PROTEIN S18
    Polymer: 18 Type: protein Length: 74
    Chains: R
    Organism: Escherichia coli
    Gene Names: rpsR b4202 JW4160
    UniProtKB: Protein Feature View | Search PDB | P0A7T7  
    Molecule: 30S RIBOSOMAL PROTEIN S19
    Polymer: 19 Type: protein Length: 91
    Chains: S
    Organism: Escherichia coli
    Gene Names: rpsS b3316 JW3278
    UniProtKB: Protein Feature View | Search PDB | P0A7U3  
    Molecule: 30S RIBOSOMAL PROTEIN S20
    Polymer: 20 Type: protein Length: 86
    Chains: T
    Organism: Escherichia coli
    Gene Names: rpsT b0023 JW0022
    UniProtKB: Protein Feature View | Search PDB | P0A7U7  
    Molecule: 30S RIBOSOMAL PROTEIN S21
    Polymer: 21 Type: protein Length: 71
    Chains: U
    Organism: Escherichia coli
    Gene Names: rpsU b3065 JW3037
    UniProtKB: Protein Feature View | Search PDB | P68679  
    Molecule: RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE A
    Polymer: 22 Type: protein Length: 252
    Chains: V
    EC#: 2.1.1.182   
    Fragment: RESIDUES 17-268
    Organism: Escherichia coli
    Gene Names: rsmA ksgA b0051 JW0050
    UniProtKB: Protein Feature View | Search PDB | P06992  
     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 3
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 4
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 5
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 6
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 7
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 8
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 9
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 10
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 11
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 12
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 13
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 14
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 15
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 16
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 17
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 18
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 19
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 20
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 21
    Scientific Name: Escherichia coli   Taxonomy    
    Polymer: 22
    Scientific Name: Escherichia coli   Taxonomy   Expression System: Escherichia coli  
     
  •   Related PDB Entries Hide
    Identifier Details
    1M5G   ALL-ATOM HOMOLOGY STRUCTURE OF THE ESCHERICHIA COLI 30SRIBOSOMAL SUBUNIT 
    1MJ1   FITTING THE TERNARY COMPLEX OF EF-TU/TRNA/GTP AND BOSOMALPROTEINS INTO A 13 A CRYO-EM MAP OF THE COLI 70S RIBOSOME 
    1P6G   REAL SPACE REFINED COORDINATES OF THE 30S SUBUNIT FITTEDINTO THE LOW RESOLUTION CRYO-EM MAP OF THE EF -G.GTP STATEOF E. COLI 70S RIBOSOME 
    1P87   REAL SPACE REFINED COORDINATES OF THE 30S SUBUNIT FITTEDINTO THE LOW RESOLUTION CRYO-EM MAP OF THE INITIATION-LIKESTATE OF E. COLI 70S RIBOSOME 
    1QYR   2.1 ANGSTROM CRYSTAL STRUCTURE OF KSGA: A UNIVERSALLYCONSERVED ADENOSINE DIMETHYLTRANSFERASE 
    1S03   THE STRUCTURE OF A RIBOSOMAL PROTEIN S8/SPC OPERON MRNACOMPLEX 
    1ZN1   COORDINATES OF RRF FITTED INTO CRYO-EM MAP OF THE 70S POST-TERMINATION COMPLEX 
    2AVY   CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROMESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINSTHE 30S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTALSTRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED INREMARK 400. 
    2AW7   CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROMESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINSTHE 30S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRECRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND ISDESCRIBED IN REMARK 400. 
    2VHO   STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME 
    2VHP   STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME 
    2WWL   E.COLI 70S RIBOSOME STALLED DURING TRANSLATION OF TNAC LEADER PEPTIDE. THIS FILE CONTAINS THE 30S, THE P- SITE TRNA AND THE TNAC LEADER PEPTIDE (PART 1 OF ). 
    4A2I   CRYO-ELECTRON MICROSCOPY STRUCTURE OF THE 30S SUBUNIT IN COMPLEX WITH THE YJEQ BIOGENESIS FACTOR 
     
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  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Boehringer, D.,  O'Farrell, H.C.,  Rife, J.P.,  Ban, N.

    Deposition:   2012-01-03
    Release:   2012-02-15
    Last Modified (REVDAT):   2013-09-25
     
  •   Revision History    Hide
    Mouse over text for details
    2013-09-25
    Other
    2013-09-25
    Geometry validation
    2012-04-04
    Other
     
  •   Experimental Details Hide
    Method:   ELECTRON MICROSCOPY
    Exp. Data:


    EM Resolution [Å]: 13.5
    Aggregation State: PARTICLE
    Symmetry Type: MIXED SYMMETRY Reconstruction Method: SINGLE PARTICLE
    Specimen Type: CRYO EM