4A95

Plasmodium vivax N-myristoyltransferase with quinoline inhibitor

Structural Biology Knowledgebase: 4A95 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4A95

Classification: TRANSFERASE

Total Structure Weight: 139035.11

Macromolecule Entities
Molecule Chains Length Organism Details
GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE A, B, C 384 Plasmodium vivax EC#: 2.3.1.97 IUBMB
Fragment: RESIDUES 27-410

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
9MT
Query on 9MT

A, B, C 3-(3-BUTYL-6-METHOXY-2-METHYL-QUINOLIN-4- YL)SULFANYLPROPANENITRILE
C18 H22 N2 O S
UJFIVLIFWNFOIZ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
CL
Query on CL

A, B, C CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
JSmol
MG
Query on MG

A, B, C MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NHW
Query on NHW

A, B, C 2-oxopentadecyl-CoA
C36 H64 N7 O17 P3 S
JKWHUJMJVNMKEF-UOCZADIYSA-J
Ligand Explorer
 
JSmol
SO4
Query on SO4

B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
9MT N/A in BindingDB
IC50: 2900 nM  BindingMOAD
Ki: 1730 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.55 Å
  • R-Value Free: 0.236
  • R-Value Work: 0.186
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.49 α = 90.00
b = 121.56 β = 90.00
c = 179.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-24
  • Released Date: 2012-06-27
  • Deposition author(s): Goncalves, V., Brannigan, J.A., Whalley, D., Ansell, K.H., Saxty, B., Holder, A.A., Wilkinson, A.J., Tate, E.W., Leatherbarrow, R.J.

Revision History

  • 2012-07-18
    Type: Refinement description | Details: REMARK 3
  • 2012-07-18
    Type: Atom nomenclature | Details: HETATM
  • 2012-07-18
    Type: Non-polymer description | Details: HET, REMARK 600, REMARK 620, FORMUL, HETNAM
  • 2012-07-18
    Type: Binding sites and description | Details: REMARK 800, SITE
  • 2012-07-18
    Type: Linkage | Details: LINK