4A6U

Crystal structure of the omega transaminase from Chromobacterium violaceum in the apo form, crystallised from PEG 3350

Structural Biology Knowledgebase: 4A6U SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.180
  • R-Value Work: 0.154

Literature

Macromolecules
Sequence Display for 4A6U

Classification: TRANSFERASE

Total Structure Weight: 102779.89

Macromolecule Entities
Molecule Chains Length Organism Details
OMEGA TRANSAMINASE A, B 459 Chromobacterium violaceum EC#: 2.6.1.18 IUBMB 2.6.1.62 IUBMB
Gene Name(s): CV_2025
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SCN
Query on SCN

A, B THIOCYANATE ION
C N S
ZMZDMBWJUHKJPS-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.180
  • R-Value Work: 0.154
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.17 α = 109.14
b = 61.11 β = 85.59
c = 60.24 γ = 103.25

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-11-08
  • Released Date: 2012-01-25
  • Deposition author(s): Logan, D.T., Hakansson, M., Yengo, K., Svedendahl Humble, M., Engelmark Cassimjee, K., Walse, B., Abedi, V., Federsel, H.-J., Berglund, P.

Revision History

  • 2012-08-01
    Type: Citation | Details: JRNL