4A5X

Structures of MITD1

Structural Biology Knowledgebase: 4A5X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4A5X

Classification: PROTEIN TRANSPORT

Total Structure Weight: 24389.91

Macromolecule Entities
Molecule Chains Length Organism Details
MIT DOMAIN-CONTAINING PROTEIN 1 A, B 86 Homo sapiens Fragment: MIT, RESIDUES 9-85
Gene Name(s): MITD1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CHARGED MULTIVESICULAR BODY PROTEIN 1A C, D 16 Homo sapiens Fragment: RESIDUES 184-196
Gene Name(s): CHMP1A Gene View CHMP1 KIAA0047 PCOLN3 PRSM1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P15
Query on P15

B 2,5,8,11,14,17-HEXAOXANONADECAN-19-OL
C13 H28 O7
FHHGCKHKTAJLOM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.91 Å
  • R-Value Free: 0.227
  • R-Value Work: 0.201
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.07 α = 90.00
b = 74.16 β = 90.00
c = 89.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-10-28
  • Released Date: 2012-11-14
  • Deposition author(s): Hadders, M.A., Agromayor, M., Caballe, A., Obita, T., Perisic, O., Williams, R.L., Martin-Serrano, J.

Revision History

  • 2013-11-13
    Type: Sequence database correspondence | Details: DBREF
  • 2013-11-13
    Type: Citation | Details: JRNL
  • 2013-11-13
    Type: Polymer description | Details: COMPND