3ZXW

STRUCTURE OF ACTIVATED RUBISCO FROM THERMOSYNECHOCOCCUS ELONGATUS COMPLEXED WITH 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE

Structural Biology Knowledgebase: 3ZXW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.181

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3ZXW

Classification: LYASE

Total Structure Weight: 271073.91

Macromolecule Entities
Molecule Chains Length Organism Details
RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN A, C, E, G 475 Thermosynechococcus elongatus EC#: 4.1.1.39 IUBMB
Gene Name(s): cbbL rbcL tll1506
RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN B, D, F, H 118 Thermosynechococcus elongatus EC#: 4.1.1.39 IUBMB

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CAP
Query on CAP

A, C, E, G 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
C6 H14 O13 P2
ITHCSGCUQDMYAI-ZMIZWQJLSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

A, C, E, G GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A, C, E, G MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
KCX
Query on KCX
A, C, E, G L-PEPTIDE LINKING C7 H14 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.213
  • R-Value Work: 0.181
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 111.50 α = 90.00
b = 111.50 β = 90.00
c = 397.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-08-16
  • Released Date: 2012-08-29
  • Deposition author(s): Terlecka, B., Wilhelmi, V., Bialek, W., Gubernator, B., Szczepaniak, A., Hofmann, E.

Revision History

No revisions since initial release