3WBE

Rice Os3BGlu6 Beta-Glucosidase E178Q mutant in a covalent complex with Glc from GA4GE.

Structural Biology Knowledgebase: 3WBE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.180
  • R-Value Work: 0.145

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 3WBE

Classification: HYDROLASE

Total Structure Weight: 56106.36

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-glucosidase 6 A 489 Oryza sativa EC#: 3.2.1.21 IUBMB
Fragment: Os3BGlu6 beta-glucosidase, UNP residues 38-521
Mutation: E178Q
Gene Name(s): BGLU6 Os03g0212800 LOC_Os03g11420
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GLC
Query on GLC

A ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.97 Å
  • R-Value Free: 0.180
  • R-Value Work: 0.145
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 57.05 α = 90.00
b = 91.21 β = 90.00
c = 111.37 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-14
  • Released Date: 2013-09-04
  • Deposition author(s): Sansenya, S., Hua, Y., Cairns, J.R.K.

Revision History

No revisions since initial release